WebJan 9, 2024 · Is there a way to control annotations in the the annotatePeak function? For instance I would like to ignore "downstream" and consider those peaks "intergenic". Or for instance combine "1st exon" with "other exon" so there is one category of "exon". Any help would be great, thanks for doing this!-Andrew WebApr 9, 2024 · Downstream(within 3kb) Intergenic; Downstream is defined as the downstream of gene end. ChIPseeker also provides parameter …
plotPeakProf2: plotPeakProf2 in GuangchuangYu/ChIPseeker: …
WebOct 27, 2015 · :dart: ChIP peak Annotation, Comparison and Visualization - ChIPseeker/utilities.R at master · YuLab-SMU/ChIPseeker WebFeb 16, 2024 · Consistent with this observation, ChIPseeker analysis of peak distributions demonstrates that the conserved peaks have more than double the proportion of peaks assigned to the promoter region (35.4%) compared to unique peaks from control and cadmium-treated cells or a randomized set of control peaks (11.7%, 11.3%, and 8.5%, … dggyo hisse senedi
peakHeatmap function - RDocumentation
Web1 day ago · An early flowering mutant screen was used to identify flail, a mutant mapping to a non-coding region of the genome.This study shows that the locus encodes for the long noncoding RNA FLAIL, which serves as an accessory component of the spliceosome that regulates alternative splicing and gene expression to repress flowering.. FLAIL is a trans … WebI update the source code in devel branch to support setting the downstream range via: options(ChIPseeker.downstreamDistance = 500) ADD COMMENT • link 5.4 years ago … WebFeb 12, 2024 · Details. peak stands for the peak file.. by the features of interest. (1) if users use txdb, by can be one of 'gene', 'transcript', 'exon', 'intron' , '3UTR' , '5UTR', 'UTR'. These features can be obtained by functions from txdb object. (2) if users use self-made granges object, by can be everything. Because this by will not pass to functions to get features, … c i b c online