WebJan 10, 2024 · In this paper, we describe the implementation of the phenix.real_space_refine program and demonstrate its performance by applications to simulated data and to cryo … WebJun 1, 2024 · This article describes the implementation of real-space refinement in the phenix.real_space_refine program from the PHENIX suite. The use of a simplified …
[phenixbb] phenix.refine: including modifications
WebStep 2: Refinement You can launch phenix.refine directly from Phaser by clicking the button labeled "Run phenix.refine". This will load the output model and the MTZ file; you should … WebJan 30, 2024 · Phenix tutorial: phenix.refine using default values (GUI) Phenix Tutorials 1.82K subscribers 61 10K views 6 years ago Phenix tools This tutorial explains how to run phenix.refine in the... mural on shipping containers
Structure refinement in PHENIX - University of Oregon
WebIf you are using the PHENIX GUI, there is a toolbar button for ReadySet in the phenix.refine interface, which will automatically load the output files for use in phenix.refine. I had … WebElectron cryomicroscopy (cryo-EM) has advanced quickly in recent years, which has led to an increased number of atomic structures. Several tools for the analysis and validation of cryo-EM data and models have been developed within the Phenix software package, such as the refinement program phenix.real_space_refine. WebThis article describes the implementation of real-space refinement in the phenix.real_space_refine program from the PHENIX suite. The use of a simplified refinement target function enables very fast calculation, which in turn makes it possible to identify optimal data-restraint weights as part of routine refinements with little runtime cost. how to open a desk lock